Protein dynamics 101
(C) 2012 David Liao lookatphysics.com This is a canonical worked problem from introductory systems biology (Alon, Ch. 2.4, pp. 18-21). We will explain one way ...
lookatphysics
DROIDS-1.0 software for comparative protein dynamics
Our main goal is to try to visualize the impact of one of the longest time scale processes in the universe (i.e molecular evolution over 100s millions of years) on ...
BabbittLab at RIT - Comparative Protein Dynamics
Kurt Wüthrich: Protein Dynamics Seen by NMR
Molecular Frontiers Symposium, 2017 Budapest, Hungary.
Med in Prot
Protein dynamics and communication
Animation for Brussels universities.
Augis Kažkur
Amyloid beta protein dynamics
An animation showing various conformers of the amyloid beta protein that builds up in Alzheimers Disease, including a sonic rendition of the subtle changes in ...
The Florey Institute of Neuroscience and Mental Health
Protein Dynamics with Shuttle NMR
Fabien Ferrage discusses his research into protein dynamics with shuttle NMR.
AZoTV
Protein Dynamics within the 3D Cell Nucleus
Three-dimensional cross-sectional representation of the measured Dendra2-Pol-II diffusion inside a single cell nucleus. See the article by Singh et al. in the ...
Cell Press
Protein Dynamics, Vesa Hytönen, Tampere University
This is a 360° video and can be rotated using the mouse, the pan button in the top left corner, or WASD keys. Vesa Hytönen leads the research group focusing ...
Tampere Universities
Impact of protein dynamics on assembly.
The system consists of 128 dimeric subunits with variable NTD-CTD orientation. The distribution of domain orientation is derived from 303 ns MD simulation ...
James Chen
Molecular dynamics of the spike protein
Molecular dynamics simulation trajectory of four S proteins embedded in a membrane. The proteins and lipids are shown in surface representation. Glycans are ...
MaxPlanckSociety
Martin Gruebele, 29.6.20- Protein folding and association dynamics
Protein Folding and Dynamics Webinar
Hydrogen bonding analysis of protein dynamics in VMD
This video is a part of VMD tutorials for beginners. in this video we introduce HBonds Plugin, Version 1.2 The Hbonds plugin counts the number of hydrogen ...
Mohamed shehata
Angus Lamond -Protein Dynamics/Proteomics/
Angus Lamond Protein Dynamics/Proteomics/the Future of Cell Biology in the Post-genome Age.
Israel Institute for Advanced Studies
All-atom Molecular Dynamics Simulation of the Bacterial Cytoplasm
How biomolecules behave in crowded cellular environments has been an important question in life science. Researchers at RIKEN and Michigan State ...
rikenchannel
Coarse-grained and multiscale modeling of proteins [review paper presentation]
The review text: http://pubs.acs.org/doi/full/10.1021/acs.chemrev.6b00163 Movie for download and license information: ...
Bio Comp Pictures
MERMAID : Martini coarsE gRained MembrAne proteIn Dynamics
We provide an online platform to perform Coarse-grained molecular dynamics simulations. Users can generate and retrieve necessary input files to run ...
mangesh damre
Jane Dyson, 13.7.20- NMR Dynamics Studies of Protein Folding Intermediates
Protein Folding and Dynamics Webinar
Molecular dynamics simulation of a protein
2 nanosecond molecular dynamics simulation of enzyme Glutamate Mutase (pdb code 1I9C) in explicit solvent (not shown) using NAMD molecular dynamics ...
Patrick von Glehn
MS10A - Henrike Niederholtmeyer: Engineering protein dynamics in artificial cells and organelles
Dynamics Days Digital 2020
The dynamics of protein structure (pdb:1KFR)
The movie shows fluctuations of protein structure [trematode hemoglobin, pdb id: 1KFR] generated by CABS-flex web server. The CABS-flex automatically ...
Bio Comp Pictures
Eric Reits Talks About Microscopy Techniques to Explore Protein Dynamics
Leica meets Science: Interview with Eric Reits, Academic Medical Center (AMC) at the University of Amsterdam, the Netherlands. Eric Reits is a principal ...
LeicaMicrosystems
Simulation of millisecond protein folding: NTL9 (from Folding@home)
Simulating protein folding on the millisecond timescale has been a major challenge for many years. In a recent paper ...
Pande Lab Science
Kinemed's Marc Hellerstein on Protein Dynamics
Kinemed's Marc Hellerstein's presentation at PMWC Silicon Valley 2012 Conference - Proteomics: Proteome Dynamics and Tissue Flux Imaging.
Leka Fineman
Spike Protein dynamics
Molecular Dynamics is a powerful computational tool which provide insight into molecular motions at very small time scales.
Ranvir Singh
Protein Dynamics
Molecular dynamic simulation of DNA mimic protein UGI. The trajectory data is generated by NAMD and then imported into Blender with Pyrite addon.
J J
Why are proteins dynamic
In this video I discuss why proteins are dynamic although they are usually presented as static figures.
FortuneFavorsPrep
Rudimentary molecular mechanics to explore protein dynamics and answer simple questions
Uses AR.js, A-Frame and Cannon.js to study a hypothetical system where two proteins are fused through a flexible 6 residue linker into a single protein. Helps to ...
Moléculas en Realidad Aumentada
Vanderbilt Biomolecular NMR Facility Tour
A video tour of Vanderbilt University's Center for Structural Biology Biomolecular NMR facility.
VICB
Protein-Ligand Complex Molecular Dynamics: GROMACS Tutorial- PART 1
This is a Beginners to Advanced Level tutorial on Protein-Ligand Molecular Dynamic Simulations using GROMACS Tutorial. The link for the GROMACS tutorial ...
Sanket Bapat
Protein Folding Mechanism
Protein folding is the physical process by which a protein chain acquires its native 3-dimensional structure, a conformation that is usually biologically functional, ...
Hussain Biology
Lattice proteins and Molecular Dynamics
This video was produced in December 2009 as a final project in BE243/143 class at UC Berkeley.
Vasily Volkov
Proteins are complex molecules essential to life
The Laboratory of Computational Biophysics study protein dynamics, kinetics and energetics using mainly molecular dynamics simulations on graphics ...
Universitat Pompeu Fabra - Barcelona
Tatyana Polenova | Studying Protein Dynamics in Disease with NMR
AZoTV
Cargo-protein dynamics at the basal membrane of hepatocyte-derived cells
Total Internal Reflection Fluorescence microscopy time-lapse sequence of a basolateral cargo in hepatocyte-derived cells at the basal membrane.
Francisco Lazaro-Dieguez
The dynamics of protein structure (pdb:1OA4)
The movie shows fluctuations of protein structure [hydrolase, pdb id: 1OA4] generated by CABS-flex web server. The CABS-flex automatically predict and ...
Bio Comp Pictures
High Throughput Molecular Dynamics Simulations for Drug Discovery
The session will show how MD simulations have become an excellent tool for drug discovery, thanks to the parallelisation of MD codes and the usage of GPU's.
Computational Biomedicine
Introduction to Molecular Dynamics
SimbiosOpenMM
Protein G protein dynamics. OPLS-AA + H(N) Chemical Shifts
Anders Steen Christensen
MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations | SciPy 2016
MDAnalysis (http://mdanalysis.org) is an object-oriented library for structural and temporal analysis of molecular dynamics (MD) simulation trajectories and ...
Enthought
High Speed Protein Simulations with Anton
Anton: A Special-Purpose Machine That Achieves a Hundred-Fold Speedup in Biomolecular Simulations" Molecular dynamics (MD) simulation has long been ...
UW Video
Generation of Force Fields for Protein | Molecular Dynamics Simulations | Lecture 8
The video lecture discusses about the generation of force fields for the ligand. It explains about the difference between protein with and without the force field ...
BioFlix
Mining the Evolutionary Dynamics of Protein Loop Structure and its Role in Biological Functions
"Mining the Evolutionary Dynamics of Protein Loop Structure and its Role in Biological Functions" -- Fizza Mughal, University of Illinois at Urbana-Champaign ...
NCSAatIllinois
